Can I disable one tagged product recommendations for Frequently Bought Together not for Also Bought?

If you have both Also Bought and Frequently Bought Together installed in your store, a product tagged as Recommendations disabled won't display both app widgets.

If you only want the widget to be disabled for the Frequently Bought Together app, you can tag it with the exact text Recommendations from FBT disabled

This tagging can be done in the Shopify product editing page: